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Citation
Tags
HERO ID
2017253
Reference Type
Journal Article
Title
The generalized identification of truly interfacial molecules (ITIM) algorithm for nonplanar interfaces
Author(s)
Sega, M; Kantorovich, SS; Jedlovszky, Pal; Jorge, M
Year
2013
Is Peer Reviewed?
Yes
Journal
Journal of Chemical Physics
ISSN:
0021-9606
EISSN:
1089-7690
Volume
138
Issue
4
Page Numbers
044110
Language
English
PMID
23387571
DOI
10.1063/1.4776196
Web of Science Id
WOS:000314725900011
Abstract
We present a generalized version of the ITIM algorithm for the identification of interfacial molecules, which is able to treat arbitrarily shaped interfaces. The algorithm exploits the similarities between the concept of probe sphere used in ITIM and the circumsphere criterion used in the α-shapes approach, and can be regarded either as a reference-frame independent version of the former, or as an extended version of the latter that includes the atomic excluded volume. The new algorithm is applied to compute the intrinsic orientational order parameters of water around a dodecylphosphocholine and a cholic acid micelle in aqueous environment, and to the identification of solvent-reachable sites in four model structures for soot. The additional algorithm introduced for the calculation of intrinsic density profiles in arbitrary geometries proved to be extremely useful also for planar interfaces, as it allows to solve the paradox of smeared intrinsic profiles far from the interface.
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