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Citation
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HERO ID
3549091
Reference Type
Journal Article
Title
Potential Mechanisms for Microbial Energy Acquisition in Oxic Deep-Sea Sediments
Author(s)
Tully, BJ; Heidelberg, JF
Year
2016
Is Peer Reviewed?
Yes
Journal
Applied and Environmental Microbiology
ISSN:
0099-2240
EISSN:
1098-5336
Volume
82
Issue
14
Page Numbers
4232-4243
Language
English
PMID
27208118
DOI
10.1128/AEM.01023-16
Web of Science Id
WOS:000379345100018
Abstract
UNLABELLED:
The South Pacific Gyre (SPG) possesses the lowest rates of sedimentation, surface chlorophyll concentration, and primary productivity in the global oceans. As a direct result, deep-sea sediments are thin and contain small amounts of labile organic carbon. It was recently shown that the entire SPG sediment column is oxygenated and may be representative of up to a third of the global marine environment. To understand the microbial processes that contribute to the removal of the labile organic matter at the water-sediment interface, a sediment sample was collected and subjected to metagenomic sequencing and analyses. Analysis of nine partially reconstructed environmental genomes, which represent approximately one-third of the microbial community, revealed that the members of the SPG surface sediment microbial community are phylogenetically distinct from surface/upper-ocean organisms. These genomes represent a wide distribution of novel organisms, including deep-branching Alphaproteobacteria, two novel organisms within the Proteobacteria, and new members of the Nitrospirae, Nitrospinae, and candidate phylum NC10. These genomes contain evidence for microbially mediated metal (iron/manganese) oxidation and carbon fixation linked to nitrification. Additionally, despite hypothesized energy limitation, members of the SPG microbial community had motility and chemotaxis genes and possessed mechanisms for the degradation of high-molecular-weight organic matter. This study contributes to our understanding of the metabolic potential of microorganisms in deep-sea oligotrophic sediments and their impact on local carbon geochemistry.
IMPORTANCE:
This research provides insight into the microbial metabolic potential of organisms inhabiting oxygenated deep-sea marine sediments. Current estimates suggest that these environments account for up to a third of the global marine sediment habitat. Nine novel deep-sea microbial genomes were reconstructed from a metagenomic data set and expand the limited number of environmental genomes from deep-sea sediment environments. This research provides phylogeny-linked insight into critical metabolisms, including carbon fixation associated with nitrification, which is assignable to members of the marine group 1 Thaumarchaeota, Nitrospinae, and Nitrospirae and neutrophilic metal (iron/manganese) oxidation assignable to a novel proteobacterium.
Tags
•
Nitrate/Nitrite
Broad LitSearch 2016/1/1 - 2017/12/5
Refs found by LitSearch but not ATSDR/IARC
WoS
Refs found only by 2017 LitSearch or Citation Mapping
Ref Types 12/2017
All Others
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