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HERO ID
7424062
Reference Type
Journal Article
Title
A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly
Author(s)
Francis, WR; Christianson, LM; Kiko, R; Powers, ML; Shaner, NC; Haddock, SH; ,
Year
2013
Is Peer Reviewed?
Yes
Journal
BMC Genomics
ISSN:
1471-2164
Publisher
BMC
Location
LONDON
Page Numbers
167
Language
English
PMID
23496952
DOI
10.1186/1471-2164-14-167
Web of Science Id
WOS:000318941500001
URL
http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-14-167
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Abstract
The lack of genomic resources can present challenges for studies of non-model organisms. Transcriptome sequencing offers an attractive method to gather information about genes and gene expression without the need for a reference genome. However, it is unclear what sequencing depth is adequate to assemble the transcriptome de novo for these purposes.
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