US EPA

1548656 

Journal Article 

Contrasting denitrifier communities relate to contrasting N2O emission patterns from acidic peat soils in arctic tundra 

Palmer, K; Biasi, C; Horn, MA 

2012 

1 

ISME Journal
ISSN: 1751-7362
EISSN: 1751-7370 

6 

5 

1058-1077 

English 

22134649 

10.1038/ismej.2011.172 

WOS:000302950700014 

Cryoturbated peat circles (that is, bare surface soil mixed by frost action; pH 3-4) in the Russian discontinuous permafrost tundra are nitrate-rich 'hotspots' of nitrous oxide (N(2)O) emissions in arctic ecosystems, whereas adjacent unturbated peat areas are not. N(2)O was produced and subsequently consumed at pH 4 in unsupplemented anoxic microcosms with cryoturbated but not in those with unturbated peat soil. Nitrate, nitrite and acetylene stimulated net N(2)O production of both soils in anoxic microcosms, indicating denitrification as the source of N(2)O. Up to 500 and 10 μM nitrate stimulated denitrification in cryoturbated and unturbated peat soils, respectively. Apparent maximal reaction velocities of nitrite-dependent denitrification were 28 and 18 nmol N(2)O g(DW)(-1) h(-1), for cryoturbated and unturbated peat soils, respectively. Barcoded amplicon pyrosequencing of narG, nirK/nirS and nosZ (encoding nitrate, nitrite and N(2)O reductases, respectively) yielded ≈49 000 quality-filtered sequences with an average sequence length of 444 bp. Up to 19 species-level operational taxonomic units were detected per soil and gene, many of which were distantly related to cultured denitrifiers or environmental sequences. Denitrification-associated gene diversity in cryoturbated and in unturbated peat soils differed. Quantitative PCR (inhibition-corrected per DNA extract) revealed higher copy numbers of narG in cryoturbated than in unturbated peat soil. Copy numbers of nirS were up to 1000 × higher than those of nirK in both soils, and nirS nirK(-1) copy number ratios in cryoturbated and unturbated peat soils differed. The collective data indicate that the contrasting N(2)O emission patterns of cryoturbated and unturbated peat soils are associated with contrasting denitrifier communities. 

permafrost-affected soil; global change; wetland; barcoded amplicon pyrosequencing; quantitative PCR